U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX13713592: HDR-comtrol
1 ILLUMINA (HiSeq X Ten) run: 4M spots, 1.2G bases, 363.3Mb downloads

Design: common medthod
Submitted by: South China Normal University
Study: Raw sequence reads of Danio rerio Base editing
show Abstracthide Abstract
Here, we optimize and characterize SpG and SpRY systems in zebrafish. Using purified protein combined with synthetic modified gRNA, nearly PAM-less sites could be targeted efficiently in zebrafish genome, which suggested that SpG and SpRY can be efficiently used in vertebrate. In addition, we compared SpCas9, SpG, SpRY, VQR and ScCas9 editing activity bearing different PAMs and gave an advice for selection of CRISPR-Cas toolbox to precise edit genome in zebrafish. Altogether, our results significantly improved the CRISPR-Cas targeting genomic landscape in zebrafish model and switch on the application of SpG and SpRY toolbox in other in vivo systems.
Sample: HDR-control of Danio rerio
SAMN24813217 • SRS11592201 • All experiments • All runs
Organism: Danio rerio
Library:
Name: 4
Instrument: HiSeq X Ten
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 4M spots, 1.2G bases, 363.3Mb
Run# of Spots# of BasesSizePublished
SRR175439753,999,2491.2G363.3Mb2022-03-01

ID:
19080832

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...